Armatimonadota
| Armatimonadota | |
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Scientific classification 
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| Domain: | Bacteria |
| Kingdom: | Bacillati |
| Phylum: | Tamaki et al. 2021[1] |
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| Synonyms | |
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Armatimonadota is a phylum of gram-negative bacteria.
History
Armatimonadota was originally described solely on the basis of environmental 16S rRNA gene clone sequences, and was temporarily titled candidate phylum OP10. However, in 2011 a bacterial strain belonging to the phylum was isolated from an aquatic plant in Japan. The species was named Armatimonas rosea and was the first member of its phylum, genus, and species.[2]
Members
Armatimonas rosea, an aerobic chemoheterotrophic bacterium, strain YO-36T, was isolated from rhizoplane of an aquatic plant (a reed, Phragmites australis) inhabiting a freshwater lake in Japan.[2]
Chthonomonas calidirosea, an aerobic, saccharolytic, obligately thermophilic, motile, non-spore-forming bacterium, strain T49(T), was isolated from geothermally heated soil at Hell's Gate, Tikitere, New Zealand.[3]
Phylogeny
| 16S rRNA based LTP_10_2024[4][5][6] | 120 marker proteins based GTDB 10-RS226[7][8][9] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Taxonomy
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[10] and National Center for Biotechnology Information (NCBI).[11]
- Class "Zipacnadia" Carlton et al. 2023
- Order "Zipacnadales" Carlton et al. 2023
- Family "Zipacnadaceae" Carlton et al. 2023
- Genus "Candidatus Zipacnadum" Carlton et al. 2023
- Species "Ca. Z. vermilionense" Carlton et al. 2023
- Genus "Candidatus Zipacnadum" Carlton et al. 2023
- Family "Zipacnadaceae" Carlton et al. 2023
- Order "Zipacnadales" Carlton et al. 2023
- Class "Heboniibacteriia" corrig. Carlton et al. 2023
- Order "Heboniibacterales" corrig. Carlton et al. 2023
- Family "Heboniibacteraceae" corrig. Carlton et al. 2023
- Genus "Candidatus Heboniibacterum" corrig. Carlton et al. 2023
- Species "Ca. H. abditum" corrig. Carlton et al. 2023
- Genus "Candidatus Heboniibacterum" corrig. Carlton et al. 2023
- Family "Heboniibacteraceae" corrig. Carlton et al. 2023
- Order "Heboniibacterales" corrig. Carlton et al. 2023
- Class UBA5829
- Order UBA5829
- Family UBA5829
- Genus "Candidatus Hippobium" Gilroy et al. 2022
- Species "Ca. H. faecium" Gilroy et al. 2022
- Genus "Candidatus Hippobium" Gilroy et al. 2022
- Family UBA5829
- Order UBA5829
- Class Fimbriimonadia Im et al. 2012
- Order Fimbriimonadales Im et al. 2012
- Family Fimbriimonadaceae Im et al. 2012
- Genus Fimbriimonas Im et al. 2012
- Species F. ginsengisoli Im et al. 2012
- Genus "Candidatus Nitrosymbiomonas" Okubo et al. 2021
- Species "Ca. N. proteolyticus" Okubo et al. 2021
- Genus Fimbriimonas Im et al. 2012
- Family Fimbriimonadaceae Im et al. 2012
- Order Fimbriimonadales Im et al. 2012
- Class Chthonomonadia corrig. Lee et al. 2011
- Order Chthonomonadales Lee et al. 2011
- Family Chthonomonadaceae Lee et al. 2011
- Genus Chthonomonas Lee et al. 2011
- Species C. calidirosea Lee et al. 2011
- Genus Chthonomonas Lee et al. 2011
- Family Chthonomonadaceae Lee et al. 2011
- Order Chthonomonadales Lee et al. 2011
- Class Armatimonadia Tamaki et al. 2011
- Order Armatimonadales Tamaki et al. 2011
- Family Armatimonadaceae Tamaki et al. 2011
- Genus Armatimonas Tamaki et al. 2011
- Species A. rosea Tamaki et al. 2011
- Genus Armatimonas Tamaki et al. 2011
- Family Armatimonadaceae Tamaki et al. 2011
- Order Capsulimonadales Li, Kudo & Tonouchi 2018
- Family Capsulimonadaceae Li, Kudo & Tonouchi 2018
- Genus Capsulimonas Li, Kudo & Tonouchi 2018
- Species C. corticalis Li, Kudo & Tonouchi 2018
- Genus Capsulimonas Li, Kudo & Tonouchi 2018
- Family Capsulimonadaceae Li, Kudo & Tonouchi 2018
- Order Armatimonadales Tamaki et al. 2011
Notes
References
- ^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
- ^ a b Tamaki, Hideyuki; Tanaka, Yasuhiro; Matsuzawa, Hiroaki; Muramatsu, Mizuho; Meng, Xian-Ying; Hanada, Satoshi; Mori, Kazuhiro; Kamagata, Yoichi (2010). "Armatimonas rosea gen. nov., sp. nov., a Gram-negative, aerobic, chemoheterotrophic bacterium of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 6): 1442–7. doi:10.1099/ijs.0.025643-0. PMID 20622056.
- ^ Lee, Kevin C. Y.; Dunfield, Peter F.; Morgan, Xochitl C.; Crowe, Michelle A.; Houghton, Karen M.; Vyssotski, Mikhail; Ryan, Jason L. J.; Lagutin, Kirill; et al. (2010). "Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic microorganism of a novel bacterial class, Chthonomonadetes classis. nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 10): 2482–90. doi:10.1099/ijs.0.027235-0. PMID 21097641.
- ^ "The LTP". Retrieved 10 December 2024.
- ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ^ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ J.P. Euzéby. "Armatimonadetes". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2011-06-13. Retrieved 2016-03-20.
- ^ Sayers; et al. "Armatimonadetes". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.